HL_9F1C_067
3D structure
- PDB id
- 9F1C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.78 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F1C_067 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.1417
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
9F1C|1|B5|A|2219
9F1C|1|B5|C|2220
9F1C|1|B5|G|2221
9F1C|1|B5|A|2222
9F1C|1|B5|G|2223
9F1C|1|B5|A|2224
9F1C|1|B5|A|2225
9F1C|1|B5|C|2226
9F1C|1|B5|U|2227
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BP
- Large ribosomal subunit protein uL22
- Chain BR
- Ribosomal protein L19
- Chain Bd
- 60S ribosomal protein L31
- Chain Ct
- Nascent polypeptide-associated complex subunit alpha
- Chain Cu
- Transcription factor BTF3
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