HL_9F1C_075

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

AGUUCUCUU(PSU)U

Length

11 nucleotides

Bulged bases

9F1C|1|B5|U|2474

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1C_075 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1973

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

9F1C|1|B5|A|2466
9F1C|1|B5|G|2467
9F1C|1|B5|U|2468
9F1C|1|B5|U|2469
9F1C|1|B5|C|2470
9F1C|1|B5|U|2471
9F1C|1|B5|C|2472
9F1C|1|B5|U|2473
9F1C|1|B5|U|2474
9F1C|1|B5|PSU|2475
9F1C|1|B5|U|2476

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain BU

60S ribosomal protein L22

Chain Cu

Transcription factor BTF3