HL_9F1C_100

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

9F1C|1|B5|G|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1C_100 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3148

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

9F1C|1|B5|A|4219
9F1C|1|B5|A|4220
9F1C|1|B5|G|4221
9F1C|1|B5|C|4222
9F1C|1|B5|A|4223
9F1C|1|B5|G|4224
9F1C|1|B5|A|4225
9F1C|1|B5|A|4226
9F1C|1|B5|U|4227
9F1C|1|B5|U|4228

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain Bm

Large ribosomal subunit protein eL40