HL_9F1C_123
3D structure
- PDB id
- 9F1C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.78 Å
Loop
- Sequence
- GUUCUCUU(PSU)
- Length
- 9 nucleotides
- Bulged bases
- 9F1C|1|B5|U|2474
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F1C_123 not in the Motif Atlas
- Homologous match to HL_8P9A_148
- Geometric discrepancy: 0.1861
- The information below is about HL_8P9A_148
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- Pseudoknot geometry
- Motif group
- HL_22758.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9F1C|1|B5|G|2467
9F1C|1|B5|U|2468
9F1C|1|B5|U|2469
9F1C|1|B5|C|2470
9F1C|1|B5|U|2471
9F1C|1|B5|C|2472
9F1C|1|B5|U|2473
9F1C|1|B5|U|2474
9F1C|1|B5|PSU|2475
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BR
- Ribosomal protein L19
- Chain BU
- 60S ribosomal protein L22
- Chain Cu
- Transcription factor BTF3
Coloring options: