HL_9F1D_013

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

9F1D|1|A2|U|574

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_013 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1759

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9F1D|1|A2|A|570
9F1D|1|A2|C|571
9F1D|1|A2|U|572
9F1D|1|A2|PSU|573
9F1D|1|A2|U|574
9F1D|1|A2|A|575
9F1D|1|A2|A|576
9F1D|1|A2|A2M|577
9F1D|1|A2|U|578
9F1D|1|A2|C|579
9F1D|1|A2|C|580
9F1D|1|A2|U|581
9F1D|1|A2|U|582

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

40S ribosomal protein S9

Chain Ax

40S ribosomal protein S24