HL_9F1D_034

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

9F1D|1|A2|G|1850

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_034 not in the Motif Atlas

Homologous match to HL_8C3A_227

Geometric discrepancy: 0.1357

The information below is about HL_8C3A_227

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9F1D|1|A2|G|1848
9F1D|1|A2|U|1849
9F1D|1|A2|G|1850
9F1D|1|A2|MA6|1851
9F1D|1|A2|MA6|1852
9F1D|1|A2|C|1853

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Az

60S ribosomal protein L41

Chain B5

Large subunit ribosomal RNA; LSU rRNA