HL_9F1D_039
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- UCUGAUCG
- Length
- 8 nucleotides
- Bulged bases
- 9F1D|1|B5|C|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F1D_039 not in the Motif Atlas
- Homologous match to HL_8C3A_005
- Geometric discrepancy: 0.3437
- The information below is about HL_8C3A_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
9F1D|1|B5|U|204
9F1D|1|B5|C|205
9F1D|1|B5|U|206
9F1D|1|B5|G|207
9F1D|1|B5|A|208
9F1D|1|B5|U|209
9F1D|1|B5|C|210
9F1D|1|B5|G|211
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BY
- Ribosomal protein L26
- Chain Be
- Ribosomal protein L32
- Chain DB
- N-alpha-acetyltransferase 15, NatA auxiliary subunit
Coloring options: