HL_9F1D_045

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_045 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2671

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9F1D|1|B5|U|392
9F1D|1|B5|U|393
9F1D|1|B5|G|394
9F1D|1|B5|A|395
9F1D|1|B5|A|396
9F1D|1|B5|G|397
9F1D|1|B5|A2M|398
9F1D|1|B5|G|399

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

Large ribosomal subunit protein uL22

Chain Ct

Nascent polypeptide-associated complex subunit alpha

Chain Cu

Transcription factor BTF3