HL_9F1D_046

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUCCGC

Length

6 nucleotides

Bulged bases

9F1D|1|B5|C|775

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_046 not in the Motif Atlas

Geometric match to HL_4LFB_009

Geometric discrepancy: 0.1163

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

9F1D|1|B5|G|773
9F1D|1|B5|U|774
9F1D|1|B5|C|775
9F1D|1|B5|C|776
9F1D|1|B5|G|777
9F1D|1|B5|C|778

Current chains

Chain B5

28S rRNA

Nearby chains