3D structure

PDB id
9F1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
Experimental method
ELECTRON MICROSCOPY
Resolution
3.26 Å

Loop

Sequence
CCUUCCAGUCCG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9F1D_053 not in the Motif Atlas
Geometric match to HL_4ENC_001
Geometric discrepancy: 0.3832
The information below is about HL_4ENC_001
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_00911.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

9F1D|1|B5|C|1392
9F1D|1|B5|C|1393
9F1D|1|B5|U|1394
9F1D|1|B5|U|1395
9F1D|1|B5|C|1396
9F1D|1|B5|C|1397
9F1D|1|B5|A|1398
9F1D|1|B5|G|1399
9F1D|1|B5|U|1400
9F1D|1|B5|C|1401
9F1D|1|B5|C|1402
9F1D|1|B5|G|1403

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BC
60S ribosomal protein L4
Chain BE
60S ribosomal protein L6
Chain BF
Ribosomal Protein uL30
Chain BQ
Large ribosomal subunit protein eL18
Chain Bb
60S ribosomal protein L29

Coloring options:


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