HL_9F1D_061

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

9F1D|1|B5|G|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_061 not in the Motif Atlas

Geometric match to HL_5TBW_025

Geometric discrepancy: 0.1012

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9F1D|1|B5|G|1803
9F1D|1|B5|G|1804
9F1D|1|B5|U|1805
9F1D|1|B5|A|1806
9F1D|1|B5|A|1807
9F1D|1|B5|G|1808
9F1D|1|B5|C|1809

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10