HL_9F1D_066

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_066 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.097

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9F1D|1|B5|C|2160
9F1D|1|B5|G|2161
9F1D|1|B5|C|2162
9F1D|1|B5|G|2163
9F1D|1|B5|G|2164
9F1D|1|B5|G|2165

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Be

Ribosomal protein L32

Chain Br

60S ribosomal protein L28