HL_9F1D_085

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9F1D|1|B5|C|3405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_085 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.4178

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9F1D|1|B5|C|3400
9F1D|1|B5|G|3401
9F1D|1|B5|C|3402
9F1D|1|B5|G|3403
9F1D|1|B5|G|3404
9F1D|1|B5|C|3405
9F1D|1|B5|G|3406

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BG

Large ribosomal subunit protein eL8

Chain BN

Ribosomal protein L15