HL_9F1D_086

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GA(A2M)GAAAU(PSU)C

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_086 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2456

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9F1D|1|B5|G|3454
9F1D|1|B5|A|3455
9F1D|1|B5|A2M|3456
9F1D|1|B5|G|3457
9F1D|1|B5|A|3458
9F1D|1|B5|A|3459
9F1D|1|B5|A|3460
9F1D|1|B5|U|3461
9F1D|1|B5|PSU|3462
9F1D|1|B5|C|3463

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bi

60S ribosomal protein L36

Chain Bo

Large ribosomal subunit protein eL42