HL_9F1D_101

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_101 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.1331

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9F1D|1|B5|U|4243
9F1D|1|B5|OMU|4244
9F1D|1|B5|OMG|4245
9F1D|1|B5|PSU|4246
9F1D|1|B5|U|4247
9F1D|1|B5|C|4248
9F1D|1|B5|A|4249

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3