HL_9F1D_105

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9F1D|1|B5|G|4440

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_105 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0724

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9F1D|1|B5|C|4434
9F1D|1|B5|PSU|4435
9F1D|1|B5|G|4436
9F1D|1|B5|A|4437
9F1D|1|B5|A|4438
9F1D|1|B5|C|4439
9F1D|1|B5|G|4440
9F1D|1|B5|C|4441
9F1D|1|B5|C|4442
9F1D|1|B5|U|4443
9F1D|1|B5|C|4444
9F1D|1|B5|U|4445
9F1D|1|B5|A|4446
9F1D|1|B5|A|4447
9F1D|1|B5|G|4448

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

Large ribosomal subunit protein uL13

Chain Bm

Ubiquitin-ribosomal protein eL40 fusion protein