HL_9F1D_106

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CCGGAAAGGGGG

Length

12 nucleotides

Bulged bases

9F1D|1|B5|A|4649, 9F1D|1|B5|A|4650, 9F1D|1|B5|G|4653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_106 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3574

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

9F1D|1|B5|C|4644
9F1D|1|B5|C|4645
9F1D|1|B5|G|4646
9F1D|1|B5|G|4647
9F1D|1|B5|A|4648
9F1D|1|B5|A|4649
9F1D|1|B5|A|4650
9F1D|1|B5|G|4651
9F1D|1|B5|G|4652
9F1D|1|B5|G|4653
9F1D|1|B5|G|4654
9F1D|1|B5|G|4655

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BM

60S ribosomal protein L14

Chain BO

Large ribosomal subunit protein uL13