HL_9F1D_108

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9F1D|1|B5|C|4763, 9F1D|1|B5|U|4765, 9F1D|1|B5|C|4766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_108 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.3751

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

9F1D|1|B5|C|4760
9F1D|1|B5|U|4761
9F1D|1|B5|C|4762
9F1D|1|B5|C|4763
9F1D|1|B5|C|4764
9F1D|1|B5|U|4765
9F1D|1|B5|C|4766
9F1D|1|B5|G|4767

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8