HL_9F1D_110

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGAGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F1D_110 not in the Motif Atlas

Homologous match to HL_8C3A_074

Geometric discrepancy: 0.0754

The information below is about HL_8C3A_074

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9F1D|1|B7|G|86
9F1D|1|B7|G|87
9F1D|1|B7|A|88
9F1D|1|B7|G|89
9F1D|1|B7|A|90
9F1D|1|B7|C|91

Current chains

Chain B7

5S rRNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BI

60S ribosomal protein L10

Chain BS

Large ribosomal subunit protein eL20