HL_9F37_001

3D structure

PDB id

9F37 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Replication-like initiation state of influenza polymerase with GTP and CTP at respectively the -1 and +1 positions (strain A/little yellow-shouldered bat/Guatemala/060/2010/H17N10)

Experimental method

X-RAY DIFFRACTION

Resolution

1.905 Å

Loop

Sequence

UAGUAA

Length

6 nucleotides

Bulged bases

9F37|1|V|U|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

7

Unit IDs

9F37|1|V|U|3
9F37|1|V|A|4
9F37|1|V|G|5
9F37|1|V|U|6
9F37|1|V|A|7
9F37|1|V|A|8

Current chains

Chain V

5' end of the vRNA promoter

Nearby chains

Chain A

Polymerase acidic protein

Chain B

RNA-directed RNA polymerase catalytic subunit

Chain R

3' end of the vRNA promoter