HL_9FBV_025

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9FBV|1|A|C|1136, 9FBV|1|A|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_025 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3146

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

9FBV|1|A|G|1134
9FBV|1|A|U|1135
9FBV|1|A|C|1136
9FBV|1|A|C|1137
9FBV|1|A|G|1138
9FBV|1|A|G|1139
9FBV|1|A|C|1140

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9