HL_9FBV_038

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

9FBV|1|a|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_038 not in the Motif Atlas

Geometric match to HL_1UN6_003

Geometric discrepancy: 0.0885

The information below is about HL_1UN6_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

9FBV|1|a|U|137
9FBV|1|a|U|138
9FBV|1|a|U|139
9FBV|1|a|C|140
9FBV|1|a|G|141
9FBV|1|a|A|142

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23