3D structure

PDB id
9FBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with P-site initiatior tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CGGCGAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9FBV_042 not in the Motif Atlas
Homologous match to HL_5J7L_141
Geometric discrepancy: 0.0575
The information below is about HL_5J7L_141
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_37369.2
Basepair signature
cWW-tSH-F-F-F
Number of instances in this motif group
9

Unit IDs

9FBV|1|a|C|246
9FBV|1|a|G|247
9FBV|1|a|G|248
9FBV|1|a|C|249
9FBV|1|a|G|250
9FBV|1|a|A|251
9FBV|1|a|G|252

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 2
Large ribosomal subunit protein bL35
Chain k
50S ribosomal protein L15
Chain w
Large ribosomal subunit protein bL28

Coloring options:


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