3D structure

PDB id
9FBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with P-site initiatior tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGACCAUC
Length
8 nucleotides
Bulged bases
9FBV|1|a|G|411
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9FBV_047 not in the Motif Atlas
Homologous match to HL_5J7L_146
Geometric discrepancy: 0.0612
The information below is about HL_5J7L_146
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_30680.3
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
15

Unit IDs

9FBV|1|a|G|410
9FBV|1|a|G|411
9FBV|1|a|A|412
9FBV|1|a|C|413
9FBV|1|a|C|414
9FBV|1|a|A|415
9FBV|1|a|U|416
9FBV|1|a|C|417

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain k
50S ribosomal protein L15

Coloring options:


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