HL_9FBV_052

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9FBV|1|a|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_052 not in the Motif Atlas

Geometric match to HL_4V9F_036

Geometric discrepancy: 0.2385

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9FBV|1|a|C|611
9FBV|1|a|G|612
9FBV|1|a|A|613
9FBV|1|a|A|614
9FBV|1|a|U|615
9FBV|1|a|A|616
9FBV|1|a|G|617

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4