HL_9FBV_098

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9FBV|1|a|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_098 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0651

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9FBV|1|a|G|2819
9FBV|1|a|A|2820
9FBV|1|a|A|2821
9FBV|1|a|G|2822
9FBV|1|a|A|2823
9FBV|1|a|C|2824
9FBV|1|a|G|2825
9FBV|1|a|A|2826
9FBV|1|a|C|2827

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17