HL_9FCO_012

3D structure

PDB id

9FCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9FCO|1|B|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FCO_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3221

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9FCO|1|B|G|462
9FCO|1|B|U|463
9FCO|1|B|U|464
9FCO|1|B|A|465
9FCO|1|B|A|466
9FCO|1|B|U|467
9FCO|1|B|A|468
9FCO|1|B|C|469
9FCO|1|B|C|470

Current chains

Chain B

16S rRNA

Nearby chains