HL_9FQZ_022

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

9FQZ|1|L5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FQZ_022 not in the Motif Atlas

Homologous match to HL_8GLP_028

Geometric discrepancy: 0.0477

The information below is about HL_8GLP_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9FQZ|1|L5|G|1864
9FQZ|1|L5|G|1865
9FQZ|1|L5|U|1866
9FQZ|1|L5|A|1867
9FQZ|1|L5|A|1868
9FQZ|1|L5|G|1869
9FQZ|1|L5|C|1870

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like