HL_9FQZ_070

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

9FQZ|1|S2|U|160, 9FQZ|1|S2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FQZ_070 not in the Motif Atlas

Homologous match to HL_9PN5_079

Geometric discrepancy: 0.2379

The information below is about HL_9PN5_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9FQZ|1|S2|G|156
9FQZ|1|S2|U|157
9FQZ|1|S2|A|158
9FQZ|1|S2|A2M|159
9FQZ|1|S2|U|160
9FQZ|1|S2|U|161
9FQZ|1|S2|C|162

Current chains

Chain S2

SSU rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24