HL_9FQZ_078

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FQZ_078 not in the Motif Atlas

Homologous match to HL_9PN5_091

Geometric discrepancy: 0.0551

The information below is about HL_9PN5_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9FQZ|1|S2|C|618
9FQZ|1|S2|A|619
9FQZ|1|S2|G|620
9FQZ|1|S2|C|621
9FQZ|1|S2|C|622
9FQZ|1|S2|G|623

Current chains

Chain S2

SSU rRNA

Nearby chains

Chain CD

Isoform 2 of SERPINE1 mRNA-binding protein 1

Chain SX

40S ribosomal protein S23