HL_9FQZ_089

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FQZ_089 not in the Motif Atlas

Geometric match to HL_8GLP_113

Geometric discrepancy: 0.2269

The information below is about HL_8GLP_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.5

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

9FQZ|1|S2|C|1460
9FQZ|1|S2|G|1461
9FQZ|1|S2|U|1462
9FQZ|1|S2|U|1463
9FQZ|1|S2|C|1464
9FQZ|1|S2|A|1465
9FQZ|1|S2|G|1466

Current chains

Chain S2

SSU rRNA

Nearby chains

Chain SR

40S ribosomal protein S17

Chain Sc

40S ribosomal protein S28

Chain Sg

Receptor of activated protein C kinase 1