HL_9FRK_008

3D structure

PDB id

9FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACUGAGACAAG(OMG)G

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRK|1|2|C|325
9FRK|1|2|A|326
9FRK|1|2|C|327
9FRK|1|2|U|328
9FRK|1|2|G|329
9FRK|1|2|A|330
9FRK|1|2|G|331
9FRK|1|2|A|332
9FRK|1|2|C|333
9FRK|1|2|A|334
9FRK|1|2|A|335
9FRK|1|2|G|336
9FRK|1|2|OMG|337
9FRK|1|2|G|338

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain J

Small ribosomal subunit protein eS8