HL_9FRK_017

3D structure

PDB id

9FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

9FRK|1|2|U|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRK|1|2|G|745
9FRK|1|2|A|746
9FRK|1|2|U|747
9FRK|1|2|U|748
9FRK|1|2|A|749
9FRK|1|2|G|750
9FRK|1|2|A|751
9FRK|1|2|U|752
9FRK|1|2|A|753
9FRK|1|2|C|754
9FRK|1|2|C|755

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain 5

mRNA aEF1A

Chain M

Small ribosomal subunit protein uS11