HL_9FRL_008

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CACUGAGACAAG(OMG)G

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|C|325
9FRL|1|2|A|326
9FRL|1|2|C|327
9FRL|1|2|U|328
9FRL|1|2|G|329
9FRL|1|2|A|330
9FRL|1|2|G|331
9FRL|1|2|A|332
9FRL|1|2|C|333
9FRL|1|2|A|334
9FRL|1|2|A|335
9FRL|1|2|G|336
9FRL|1|2|OMG|337
9FRL|1|2|G|338

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain J

Small ribosomal subunit protein eS8