HL_9FRL_031

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

9FRL|1|4|C|16, 9FRL|1|4|G|18, 9FRL|1|4|G|19, 9FRL|1|4|H2U|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FRL_031 not in the Motif Atlas

Homologous match to HL_4YYE_001

Geometric discrepancy: 0.2486

The information below is about HL_4YYE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|4|C|13
9FRL|1|4|A|14
9FRL|1|4|G|15
9FRL|1|4|C|16
9FRL|1|4|C|17
9FRL|1|4|U|17|||A
9FRL|1|4|G|18
9FRL|1|4|G|19
9FRL|1|4|H2U|20
9FRL|1|4|A|21
9FRL|1|4|G|22

Current chains

Chain 4

tRNA Met initiator

Nearby chains