HL_9FS6_008

3D structure

PDB id

9FS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACUGAGACAAG(OMG)G

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS6|1|2|C|325
9FS6|1|2|A|326
9FS6|1|2|C|327
9FS6|1|2|U|328
9FS6|1|2|G|329
9FS6|1|2|A|330
9FS6|1|2|G|331
9FS6|1|2|A|332
9FS6|1|2|C|333
9FS6|1|2|A|334
9FS6|1|2|A|335
9FS6|1|2|G|336
9FS6|1|2|OMG|337
9FS6|1|2|G|338

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain J

Small ribosomal subunit protein eS8