HL_9FS6_031

3D structure

PDB id

9FS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

9FS6|1|4|C|16, 9FS6|1|4|G|18, 9FS6|1|4|G|19, 9FS6|1|4|H2U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FS6_031 not in the Motif Atlas

Homologous match to HL_4V9K_033

Geometric discrepancy: 0.2169

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9FS6|1|4|C|13
9FS6|1|4|A|14
9FS6|1|4|G|15
9FS6|1|4|C|16
9FS6|1|4|C|17
9FS6|1|4|U|17|||A
9FS6|1|4|G|18
9FS6|1|4|G|19
9FS6|1|4|H2U|20
9FS6|1|4|A|21
9FS6|1|4|G|22

Current chains

Chain 4

tRNA met initiator

Nearby chains