HL_9FS8_017

3D structure

PDB id

9FS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aEF1A-like mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

9FS8|1|2|U|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS8|1|2|G|745
9FS8|1|2|A|746
9FS8|1|2|U|747
9FS8|1|2|U|748
9FS8|1|2|A|749
9FS8|1|2|G|750
9FS8|1|2|A|751
9FS8|1|2|U|752
9FS8|1|2|A|753
9FS8|1|2|C|754
9FS8|1|2|C|755

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain 5

mRNA Ss-aEF1A-like

Chain M

Small ribosomal subunit protein uS11