HL_9FSF_008

3D structure

PDB id

9FSF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CACUGAGACAAG(OMG)G

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FSF|1|2|C|325
9FSF|1|2|A|326
9FSF|1|2|C|327
9FSF|1|2|U|328
9FSF|1|2|G|329
9FSF|1|2|A|330
9FSF|1|2|G|331
9FSF|1|2|A|332
9FSF|1|2|C|333
9FSF|1|2|A|334
9FSF|1|2|A|335
9FSF|1|2|G|336
9FSF|1|2|OMG|337
9FSF|1|2|G|338

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain J

Small ribosomal subunit protein eS8