HL_9G1Z_012

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUUCUGC

Length

8 nucleotides

Bulged bases

9G1Z|1|1|U|542, 9G1Z|1|1|U|544, 9G1Z|1|1|G|545

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_012 not in the Motif Atlas

Homologous match to HL_8CRE_012

Geometric discrepancy: 0.4674

The information below is about HL_8CRE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

9G1Z|1|1|G|539
9G1Z|1|1|C|540
9G1Z|1|1|U|541
9G1Z|1|1|U|542
9G1Z|1|1|C|543
9G1Z|1|1|U|544
9G1Z|1|1|G|545
9G1Z|1|1|C|546

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 0

60S ribosomal protein L20

Chain q

Ribosomal 60S subunit protein L9B

Chain u

Ribosomal 60S subunit protein L14B