HL_9G1Z_030

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_030 not in the Motif Atlas

Homologous match to HL_8CRE_030

Geometric discrepancy: 0.0484

The information below is about HL_8CRE_030

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9G1Z|1|1|A|1458
9G1Z|1|1|U|1459
9G1Z|1|1|G|1460
9G1Z|1|1|A|1461
9G1Z|1|1|G|1462
9G1Z|1|1|A|1463
9G1Z|1|1|A|1464
9G1Z|1|1|C|1465
9G1Z|1|1|U|1466

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AE

Ribosomal 60S subunit protein L31B

Chain z

Ribosomal protein L19