HL_9G1Z_031

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

9G1Z|1|1|G|1503, 9G1Z|1|1|U|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_031 not in the Motif Atlas

Homologous match to HL_8CRE_031

Geometric discrepancy: 0.0599

The information below is about HL_8CRE_031

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9G1Z|1|1|A|1502
9G1Z|1|1|G|1503
9G1Z|1|1|C|1504
9G1Z|1|1|A|1505
9G1Z|1|1|G|1506
9G1Z|1|1|U|1507
9G1Z|1|1|U|1508

Current chains

Chain 1

25S rRNA

Nearby chains

Chain x

Ribosomal 60S subunit protein L17B

Chain z

Ribosomal protein L19