HL_9G1Z_042

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9G1Z|1|1|U|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_042 not in the Motif Atlas

Homologous match to HL_8CRE_042

Geometric discrepancy: 0.0577

The information below is about HL_8CRE_042

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9G1Z|1|1|C|1919
9G1Z|1|1|U|1920
9G1Z|1|1|U|1921
9G1Z|1|1|C|1922
9G1Z|1|1|G|1923
9G1Z|1|1|G|1924

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain AO

60S ribosomal protein L41

Chain AQ

Ribosomal 60S subunit protein L43A