HL_9G1Z_049

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9G1Z|1|1|A|2350, 9G1Z|1|1|A|2351, 9G1Z|1|1|C|2352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_049 not in the Motif Atlas

Homologous match to HL_8CRE_049

Geometric discrepancy: 0.0716

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9G1Z|1|1|G|2347
9G1Z|1|1|G|2348
9G1Z|1|1|G|2349
9G1Z|1|1|A|2350
9G1Z|1|1|A|2351
9G1Z|1|1|C|2352
9G1Z|1|1|G|2353
9G1Z|1|1|G|2354
9G1Z|1|1|G|2355
9G1Z|1|1|C|2356

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AF

Ribosomal 60S subunit protein L32

Chain k

60S ribosomal protein L3