HL_9G1Z_052

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9G1Z|1|1|G|2590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_052 not in the Motif Atlas

Homologous match to HL_8CRE_053

Geometric discrepancy: 0.062

The information below is about HL_8CRE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9G1Z|1|1|C|2588
9G1Z|1|1|U|2589
9G1Z|1|1|G|2590
9G1Z|1|1|G|2591
9G1Z|1|1|G|2592
9G1Z|1|1|G|2593
9G1Z|1|1|C|2594
9G1Z|1|1|G|2595
9G1Z|1|1|G|2596

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AC

60S ribosomal protein L29

Chain r

Ribosomal 60S subunit protein L10