HL_9G1Z_055

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_055 not in the Motif Atlas

Homologous match to HL_8CRE_056

Geometric discrepancy: 0.0696

The information below is about HL_8CRE_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9G1Z|1|1|C|2665
9G1Z|1|1|A|2666
9G1Z|1|1|A|2667
9G1Z|1|1|A|2668
9G1Z|1|1|A|2669
9G1Z|1|1|G|2670
9G1Z|1|1|G|2671
9G1Z|1|1|G|2672

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

Ribosomal 60S subunit protein L21A

Chain AP

Ribosomal 60S subunit protein L42A

Chain r

Ribosomal 60S subunit protein L10