HL_9G1Z_076

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

9G1Z|1|4|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_076 not in the Motif Atlas

Homologous match to HL_8CRE_077

Geometric discrepancy: 0.1295

The information below is about HL_8CRE_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86883.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

9G1Z|1|4|G|124
9G1Z|1|4|U|125
9G1Z|1|4|A|126
9G1Z|1|4|U|127
9G1Z|1|4|U|128
9G1Z|1|4|C|129

Current chains

Chain 4

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

60S ribosomal protein L8