HL_9G1Z_097

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_097 not in the Motif Atlas

Homologous match to HL_8P9A_213

Geometric discrepancy: 0.0468

The information below is about HL_8P9A_213

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9G1Z|1|A|A|1069
9G1Z|1|A|G|1070
9G1Z|1|A|A|1071
9G1Z|1|A|A|1072
9G1Z|1|A|A|1073
9G1Z|1|A|U|1074

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

Ribosomal 40S subunit protein S2

Chain X

40S ribosomal protein S22-A

Chain b

40S ribosomal protein S26