HL_9G1Z_103

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

9G1Z|1|A|U|1347, 9G1Z|1|A|U|1348

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_103 not in the Motif Atlas

Homologous match to HL_8CRE_220

Geometric discrepancy: 0.1265

The information below is about HL_8CRE_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

9G1Z|1|A|C|1344
9G1Z|1|A|A|1345
9G1Z|1|A|U|1346
9G1Z|1|A|U|1347
9G1Z|1|A|U|1348
9G1Z|1|A|G|1349

Current chains

Chain A

18S rRNA

Nearby chains

Chain G

Ribosomal 40S subunit protein S5

Chain R

Ribosomal 40S subunit protein S16A

Chain U

Ribosomal 40S subunit protein S19A