HL_9G4Q_003

3D structure

PDB id

9G4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the salivarius-1 RNA motif

Experimental method

X-RAY DIFFRACTION

Resolution

1.99 Å

Loop

Sequence

CAUGAUUUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G4Q_003 not in the Motif Atlas

Geometric match to HL_9G4Q_001

Geometric discrepancy: 0.0772

The information below is about HL_9G4Q_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08179.1

Basepair signature

cWW-F-tWH-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

9G4Q|1|B|C|12
9G4Q|1|B|A|13
9G4Q|1|B|U|14
9G4Q|1|B|G|15
9G4Q|1|B|A|16
9G4Q|1|B|U|17
9G4Q|1|B|U|18
9G4Q|1|B|U|19
9G4Q|1|B|G|20
9G4Q|1|B|A|21
9G4Q|1|B|G|22

Current chains

Chain B

RNA (52-MER)

Nearby chains